You may configure runner to add your custom XSLT scripts. Currently only XSLT scripts are supported.
<?xml version="1.0" encoding="UTF-8"?> <config xmlns="http://www.baka.sk/gene/runner/config"> <xslt location="a-xslt-file.xsl"> <description>Some description</description> <source><namespace>http://www.domain.sk/some/namespace</namespace></source> <target> <namespace>http://www.w3.org/1999/XSL/Format</namespace> <namespace>http://www.w3.org/1998/Math/MathML</namespace> </target> </xslt> <xslt location="another-xslt-file.xsl"> ... </xslt> </config>
The location attribute is an URI where the XSLT script is located. Source namespace tells GENE which namespace the transform script processes. Target namespaces tells GENE which namespaces the XSLT script produces.